Junction Explorer Note

PLEASE NOTE:

JunctionExplorer was previously supported on a Unix server at NJIT that was shut down. The code is now being ported to a new machine:
http://nature.njit.edu/biosoft/CHSalign/index.html (with an unreliable interface at present).

Once the code is ported to the new environment properly, we will post a notice. We apologize for any inconvenience. In the mean time, our lab will be able to perform a single run for you if you send email to Dr. T. Schlick, schlick@nyu.edu, with your input of an RNA secondary structure in .bpseq format.