Annotating tertiary motifs in RNA structures

1MMS - 50S ribosomal protein L11/RNA complex

Statistics of tertiary motifs

Annotated diagram (PDF, EPS)

Structure information of tertiary motifs

• Coaxial helix

ID	Strand 1		Strand 2
	Seq num	Chain	Seq num	Chain
1	1051-1056,1090-1093	C	1098-1101,1103-1108	C
2	1057-1059,1062-1065,1057-1059,1062-1065	C,C,D,D	1073-1076,1079-1081,1073-1076,1079-1081	C,D
3	1051-1056,1090-1093	D	1098-1101,1103-1108	D



• A-minor

ID	Residue 1			Residue 2			Residue 3
	Seq	Seq num	Chain	Seq	Seq num	Chain	Seq	Seq num	Chain
1	A	1085	D	G	1055	D	C	1104	D
2	A	1085	C	G	1055	C	C	1104	C



• Ribose zipper

ID	Strand 1			Strand 2
	Seq	Seq num	Chain	Seq	Seq num	Chain
1	5′-AA-3′	1084,1085	C	5′-CC-3′	1104,1105	C
2	5′-AA-3′	1084,1085	D	5′-CC-3′	1104,1105	D