RNA Matrix Program
The purpose of our program is to allow an RNA secondary structure to be converted into its matrix representation. From the matrix representation, the respective eigenvalues can be calculated in order to explore the relationship between a specific RNA topology and the eigenvalues of its respective graph.
The Program Description section has detailed information about the concepts used in this program. You can send your ct file through this form (input). The program will tell you the number of vertices that are in the structure, the Laplacian matrix, and the eigenvalues that are produced from the matrix (output).
Click on the following ct file if you would like to save a sample file on your computer that you can upload using the above form in order to execute the program: tRNA (NDB:TRNA12)