Database of RNA Pseudoknot Dual
Graphs
To learn more about an RNA, please click on its dual graph.
These graphs have been ordered according to the number
of vertices they each contain and according to the second smallest eigenvalue
of their Laplacian matrix ( is
given).
**Please
Note: Red graphs denote those structures found in Nature
and black graphs denote those that have either not yet been found or do
not exist (a question mark is placed for these in the lower right corner).
Blue graphs represent candidate RNA motifs (which have not yet been
found in Nature). V stands for number of vertices, and Nv
stands for the number of possible RNA topologies for V number of vertices.
*Number of possible RNA topologies (with an asterisk)
has been enumerated using a probabilistic method.
V
|
Nv
|
All Possible RNA Dual Graphs For A Given Number
of Vertices
|
2
|
3
|
ID: (2,1)
|
ID: (2,2)
|
2
|
3
|
ID: (2,3)
|
|
3
|
8
|
ID: (3,1)
|
ID: (3,2)
?
|
3
|
8
|
ID: (3,3)
?
|
ID: (3,4)
|
3
|
8
|
ID: (3,5)
?
|
ID: (3,6)
|
3
|
8
|
ID: (3,7)
?
|
ID: (3,8)
|
4
|
30
|
ID: (4,1)
?
|
ID: (4,2)
?
|
4
|
30
|
ID: (4,3)
?
|
ID: (4,4)
|
4
|
30
|
ID: (4,5)
?
|
ID: (4,6)
?
|
4
|
30
|
ID: (4,7)
?
|
ID: (4,8)
?
|
4
|
30
|
ID: (4,9)
|
ID: (4,10)
?
|
4
|
30
|
ID: (4,11)
?
|
ID: (4,12)
?
|
4
|
30
|
ID: (4,13)
?
|
ID: (4,14)
|
4
|
30
|
ID: (4,15)
|
ID: (4,16)
?
|
4
|
30
|
ID: (4,17)
|
ID: (4,18)
?
|
4
|
30
|
ID: (4,19)
|
ID: (4,20)
|
4
|
30
|
ID: (4,21)
?
|
ID: (4,22)
|
4
|
30
|
ID: (4,23)
?
|
ID: (4,24)
?
|
4
|
30
|
ID: (4,25)
|
ID: (4,26)
?
|
4
|
30
|
ID: (4,27)
|
ID: (4,28)
|
4
|
30
|
ID: (4,29)
?
|
ID: (4,30)
?
|
5
|
108*
|
ID: (5,1)
|
ID: (5,2)
|
5
|
108*
|
ID: (5,3)
|
ID: (5,4)
|
5
|
108*
|
ID: (5,5)
|
ID: (5,6)
|
5
|
108*
|
ID: (5,7)
|
|
6
|
494*
|
ID: (6,1)
|
ID: (6,2)
|
7
|
2388*
|
ID: (7,1)
|
|