VERTICES 2-10

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To learn more about an RNA, please click on its tree graph.

These graphs have been ordered according to the number of vertices they each contain and according to the second smallest eigenvalue of their Laplacian matrix ( is given).

**Please Note: Red graphs denote those structures found in Nature and black graphs denote those that have either not yet been found or do not exist (a question mark is placed for these in the lower right corner).  Blue graphs represent candidate RNA tree motifs (which have not yet been found in Nature).  V stands for number of vertices, and Nv stands for the number of possible RNA topologies for V number of vertices.
 
 
 
 
 

V
Nv
 All Possible RNA Topologies For A Given Number of Vertices
2
1
ID: (2,1)


fragment of U2snRNA
function: RNA splicing
    
3
1
ID: (3,1)


single strand RNA
    
4
2
ID: (4,1)


single strand RNA
ID: (4,2)


tRNA
Function: transports amino acids to form polypeptide
  
5
3
ID: (5,1)


70S (F)
ID: (5,2)


tRNA
Function: transports amino acids to form polypeptide
ID: (5,3)


tRNA
Function: transports amino acids to form polypeptide
6
6
ID: (6,1)


5S rRNA
ID: (6,2)

ID: (6,3)

ID: (6,4)


5S rRNA
ID: (6,5)

ID: (6,6)

7
11
ID: (7,1)


5S rRNA
ID: (7,2)


5S rRNA
ID: (7,3)


5S rRNA
ID: (7,4)

ID: (7,5)

ID: (7,6)


5S rRNA
ID: (7,7)

ID: (7,8)

ID: (7,9)

ID: (7,10)

ID: (7,11)

 
8
23
ID: (8,1)

ID: (8,2)

ID: (8,3)


5S rRNA
ID: (8,4)

ID: (8,5)


5S rRNA
ID: (8,6)

ID: (8,7)


5S rRNA
ID: (8,8)

ID: (8,9)

ID: (8,10)


5S rRNA
ID: (8,11)


5S rRNA
ID: (8,12)

ID: (8,13)

ID: (8,14)

ID: (8,15)


5S rRNA
ID: (8,16)

ID: (8,17)

ID: (8,18)

ID: (8,19)

ID: (8,20)


5S rRNA
ID: (8,21)

ID: (8,22)

ID: (8,23)

 
9
47
ID: (9,1)

ID: (9,2)

ID: (9,3)

ID: (9,4)

ID: (9,5)

ID: (9,6)


5S rRNA
ID: (9,7)

ID: (9,8)

ID: (9,9)

ID: (9,10)

ID: (9,11)


5S rRNA
ID: (9,12)

ID: (9,13)


5S rRNA
ID: (9,14)

ID: (9,15)

ID: (9,16)

ID: (9,17)

ID: (9,18)

ID: (9,19)

ID: (9,20)

ID: (9,21)

ID: (9,22)

ID: (9,23)

ID: (9,24)

ID: (9,25)

ID: (9,26)

ID: (9,27)


Signal Recognition Particle
ID: (9,28)

ID: (9,29)

ID: (9,30)

ID: (9,31)

ID: (9,32)

ID: (9,33)

ID: (9,34)

ID: (9,35)

ID: (9,36)

ID: (9,37)

ID: (9,38)

ID: (9,39)

ID: (9,40)

ID: (9,41)

ID: (9,42)

ID: (9,43)

ID: (9,44)

ID: (9,45)

ID: (9,46)

ID: (9,47)

 
10
106
ID: (10,1)

ID: (10,2)

ID: (10,3)

ID: (10,4)

ID: (10,5)

ID: (10,6)

ID: (10,7)

ID: (10,8)

ID: (10,9)

ID: (10,10)

ID: (10,11)

ID: (10,12)

ID: (10,13)

ID: (10,14)

ID: (10,15)

ID: (10,16)

ID: (10,17)

ID: (10,18)

ID: (10,19)

ID: (10,20)

ID: (10,21)

ID: (10,22)

ID: (10,23)

ID: (10,24)

ID: (10,25)

ID: (10,26)

ID: (10,27)

ID: (10,28)

ID: (10,29)

ID: (10,30)

ID: (10,31)

ID: (10,32)

ID: (10,33)


ID: (10,34)

ID: (10,35)

ID: (10,36)

ID: (10,37)

ID: (10,38)

ID: (10,39)

ID: (10,40)

ID: (10,41)

ID: (10,42)

ID: (10,43)

ID: (10,44)

ID: (10,45)

ID: (10,46)

ID: (10,47)

ID: (10,48)

ID: (10,49)

ID: (10,50)

ID: (10,51)

ID: (10,52)

ID: (10,53)

ID: (10,54)

ID: (10,55)

ID: (10,56)

ID: (10,57)

ID: (10,58)

ID: (10,59)

ID: (10,60)

ID: (10,61)

ID: (10,62)

ID: (10,63)

ID: (10,64)

ID: (10,65)

ID: (10,66)

ID: (10,67)

ID: (10,68)

ID: (10,69)

ID: (10,70)


5S rRNA
function:
ID: (10,71)

ID: (10,72)

ID: (10,73)

ID: (10,74)

ID: (10,75)

ID: (10,76)

ID: (10,77)

ID: (10,78)

ID: (10,79)

ID: (10,80)
ID: (10,81)

ID: (10,82)

ID: (10,83)

ID: (10,84)

ID: (10,85)

ID: (10,86)

ID: (10,87)

ID: (10,88)

ID: (10,89)

ID: (10,90)

ID: (10,91)

ID: (10,92)

ID: (10,93)

ID: (10,94)

ID: (10,95)

ID: (10,96)

ID: (10,97)

ID: (10,98)

ID: (10,99)

ID: (10,100)

ID: (10,101)

ID: (10,102)

ID: (10,103)

ID: (10,104)

ID: (10,105)

ID: (10,106)