RNA Matrix Program:

This RNA Matrix Computer Program converts an RNA secondary structure into a matrix representation of the RNA's graph. Specifically, it allows the "ct file" produced using Zuker's mFold to be uploaded in order to determine the number of vertices within the RNA structure as well as the Laplacian matrix and its associated eigenvalues. It also produces the labeled graph. To learn more about the concepts that are involved with this program, please visit the Program Description in the tutorial section.

RNA Subgraphs Programs:

This program takes two "ct" files and finds the common subgraph.