RNA Structure

Tree Topology: 4_2

Topological Aspects

  • 4 Vertices


  • Eigenvalues
    • 0.0000000000
    1.0000000000
    1.0000000000
    4.0000000000


Examples of actual RNAs corresponding to this structure from RNA databases: 150

PDB_Chain Type Discovery Method
1E8O_E7SLRNAX-RAY DIFFRACTION
1KH6_AJIIIabcX-RAY DIFFRACTION
1NYI_BA5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GPX-RAY DIFFRACTION
1Q29_BARibozymeX-RAY DIFFRACTION
1RMN_ARNA (49-MER)FLUORESCENCE TRANSFER
1RY1_E SRP ALU DOMAINELECTRON MICROSCOPY
1SER_TTRNASERX-RAY DIFFRACTION
1Y26_XVibrio vulnificus A-riboswitchX-RAY DIFFRACTION
1Y27_XBacillus subtilis xptX-RAY DIFFRACTION
2AKE_B TRANSFER RNA-TRPX-RAY DIFFRACTION
2B57_A65-MERX-RAY DIFFRACTION
2CZJ_HtmRNA (63-MER)X-RAY DIFFRACTION
2DET_CTRNAX-RAY DIFFRACTION
2DEU_DTRNAX-RAY DIFFRACTION
2DLC_YT-RNA (76-MER)X-RAY DIFFRACTION
2DR2_B TRANSFER RNA-TRPX-RAY DIFFRACTION
2EES_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
2EET_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
2EEU_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
2EEV_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
2EEW_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
2FK6_R TRNA(THR)X-RAY DIFFRACTION
2G9C_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
2HOP_A THI-BOX RIBOSWITCHX-RAY DIFFRACTION
2KRL_ARNA (102-MER)SOLUTION SCATTERING, SOLUTION NMR
2MHI_AMedaka telomerase RNASOLUTION NMR
2MTJ_ARNA (47-MER)SOLUTION NMR
2MTK_ARNA (47-MER)SOLUTION NMR
2N7M_XRNA (92-MER)SOLUTION NMR
2OJ3_BHDV RIBOZYMEX-RAY DIFFRACTION
2QUS_AHAMMERHEAD RIBOZYMEX-RAY DIFFRACTION
2XNW_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
2XNZ_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
2XO0_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
2XO1_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
379D_BARNA HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION
3DS7_A 67-MERX-RAY DIFFRACTION
3EGZ_BTetracycline aptamer and artificial riboswitchX-RAY DIFFRACTION
3EPL_FTRNAX-RAY DIFFRACTION
3FO4_AGUANINE RIBOSWITCH C74U MUTANTX-RAY DIFFRACTION
3FO6_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
3G4M_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
3GAO_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
3GER_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
3GES_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
3GOG_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
3GOT_AGUANINE RIBOSWITCHX-RAY DIFFRACTION
3HL2_ETRNASECX-RAY DIFFRACTION
3IVN_A A-RIBOSWITCHX-RAY DIFFRACTION
3J0L_WTRNAELECTRON MICROSCOPY
3J0O_WTRNAELECTRON MICROSCOPY
3J46_pP-tRNAELECTRON MICROSCOPY
3J7Y_BMT-TRNAVALELECTRON MICROSCOPY
3J9M_Bmt-tRNAValELECTRON MICROSCOPY
3JBP_7E-tRNAELECTRON MICROSCOPY
3JBU_vglycine-tRNAELECTRON MICROSCOPY
3LA5_AAdenosine RIboswitchX-RAY DIFFRACTION
3MOJ_ARNA (69-MER)X-RAY DIFFRACTION
3NKB_BThe hepatitis delta virus ribozymeX-RAY DIFFRACTION
3QSY_DTRNAX-RAY DIFFRACTION
3RKF_CGUANINE RIBOSWITCHX-RAY DIFFRACTION
3SKI_ARNA (68-MER)X-RAY DIFFRACTION
3SKL_BRNA (66-MER)X-RAY DIFFRACTION
3SKR_ARNA (66-MER)X-RAY DIFFRACTION
3SKT_ARNA (66-MER)X-RAY DIFFRACTION
3SKW_ARNA (66-MER)X-RAY DIFFRACTION
3SKZ_ARNA (68-MER)X-RAY DIFFRACTION
3SLM_BRNA (68-MER)X-RAY DIFFRACTION
3SLQ_ARNA (68-MER)X-RAY DIFFRACTION
3SUH_XRIBOSWITCHX-RAY DIFFRACTION
3SUX_XRiboswitchX-RAY DIFFRACTION
3SUY_XRIBOSWITCHX-RAY DIFFRACTION
3WFQ_BRNA (73-MER)X-RAY DIFFRACTION
3WFR_CRNA (75-MER)X-RAY DIFFRACTION
488D_BACRNA RIBOZYME STRANDX-RAY DIFFRACTION
4FE5_Bxpt-pbuX guanine riboswitch aptamer domainX-RAY DIFFRACTION
4FEJ_B A24U MUTANT OF THE B. SUBTILIS XPT-PBUXGUANINE RIX-RAY DIFFRACTION
4FEL_B U25A/A46G MUTANT OF THE B. SUBTILIS XPT-PBUXGUANIX-RAY DIFFRACTION
4FEN_B A24U/U25A/A46G MUTANT OF THE B. SUBTILIS XPT-PBUXX-RAY DIFFRACTION
4FEO_B U25A/A46G/C74U MUTANT OF THE B. SUBTILIS XPT-PBUXX-RAY DIFFRACTION
4FEP_B A24U/U25A/A46G/C74U MUTANT OF THE B. SUBTILIS XPTX-RAY DIFFRACTION
4JF2_APreQ1-II RiboswitchX-RAY DIFFRACTION
4MGM_BTRNA GLYCINEX-RAY DIFFRACTION
4O26_ETelomerase TRX-RAY DIFFRACTION
4QK8_AC-di-AMP riboswitchX-RAY DIFFRACTION
4QK9_AC-di-AMP riboswitchX-RAY DIFFRACTION
4QKA_AC-di-AMP riboswitchX-RAY DIFFRACTION
4QLN_ARNA (117-MER)X-RAY DIFFRACTION
4RZD_APreQ1-III Riboswitch (Class 3)X-RAY DIFFRACTION
4TZX_X VIBRIO VULNIFICUS ADENINE RIBOSWITCHX-RAY DIFFRACTION
4TZY_X VIBRIO VULNIFICUS ADENINE RIBOSWITCHX-RAY DIFFRACTION
4UG0_S6HUMAN INITIATOR MET-TRNA-IELECTRON MICROSCOPY
4V5S_AYA-SITE TRNA G24A TRP-TRNA TRPX-RAY DIFFRACTION
4V61_BB5S rRNAELECTRON MICROSCOPY
4V6T_AXformyl-methionine specific initiator transfer RNAELECTRON MICROSCOPY
4V7C_BB5S ribosomal RNAELECTRON MICROSCOPY
4V7D_AB5S ribosomal RNAELECTRON MICROSCOPY
4V7M_AYtRNA-GlnX-RAY DIFFRACTION
4V8O_AVPE HYBRID STATE TRNA FMETX-RAY DIFFRACTION
4V97_AWE-SITE TRNA PHE OR A-SITE tRNA PheX-RAY DIFFRACTION
4W29_AXtRNAX-RAY DIFFRACTION
4WC2_BRNA 75-MERX-RAY DIFFRACTION
4WC3_BRNA 76-MERX-RAY DIFFRACTION
4WC4_BRNA (74-MER)X-RAY DIFFRACTION
4WC5_BRNA (74-MER)X-RAY DIFFRACTION
4WC6_BRNA (75-MER)X-RAY DIFFRACTION
4WC7_BRNA (75-MER)X-RAY DIFFRACTION
4WRA_3KtRNA-TyrX-RAY DIFFRACTION
4WRO_3KtRNA-PheX-RAY DIFFRACTION
4X0B_BRNA (77-MER)X-RAY DIFFRACTION
4XNR_X VIBRIO VULNIFICUS ADENINE RIBOSWITCHX-RAY DIFFRACTION
5B63_DTRNA-ARGX-RAY DIFFRACTION
5C7U_B 5'-MONOPHOSPHATE WTGUANINE RIBOSWITCHX-RAY DIFFRACTION
5D5L_APREQ1-II RIBOSWITCHX-RAY DIFFRACTION
5DDO_AL-glutamine riboswitch (58-MER)X-RAY DIFFRACTION
5DDP_ARNA (61-MER)X-RAY DIFFRACTION
5DDQ_AL-GLUTAMINE RIBOSWITCH RNA (61-MER)X-RAY DIFFRACTION
5DDR_BL-GLUTAMINE RIBOSWITCH RNA (61-MER)X-RAY DIFFRACTION
5E81_3LtRNA-LysX-RAY DIFFRACTION
5EL5_3KtRNALysX-RAY DIFFRACTION
5EL6_3KtRNALysX-RAY DIFFRACTION
5EL7_1LtRNALysX-RAY DIFFRACTION
5GAK_AThe A-site tRNA was modeled based on an E. coli tRELECTRON MICROSCOPY
5IB7_1KtRNALysX-RAY DIFFRACTION
5IB7_3LtRNALysX-RAY DIFFRACTION
5IBB_1KtRNAValX-RAY DIFFRACTION
5IMQ_4P- site tRNAELECTRON MICROSCOPY
5IMQ_5E site tRNAELECTRON MICROSCOPY
5K0Y_NRNA (75-MER)ELECTRON MICROSCOPY
5KCR_1xP-site tRNAELECTRON MICROSCOPY
5KPY_A5-hydroxytryptophanRNA aptamerX-RAY DIFFRACTION
5NP6_BP-site tRNA-GlyELECTRON MICROSCOPY
5O2R_xP-site Ile-tRNAELECTRON MICROSCOPY
5OOL_Bmitochondrial tRNAValELECTRON MICROSCOPY
5OOM_BMITOCHONDRIAL TRNAVALELECTRON MICROSCOPY
5SWE_XVibrio vulnificus strain 93U204 chromosome II, adeX-RAY DIFFRACTION
5T7V_DE-site tRNAELECTRON MICROSCOPY
5TC1_Rphage MS2 genomeELECTRON MICROSCOPY
5UQ8_zE-site tRNA PheELECTRON MICROSCOPY
5UZA_XRNA (71-MER)X-RAY DIFFRACTION
5WFK_yPhe-tRNA-PheELECTRON MICROSCOPY
5WWS_CTRNAX-RAY DIFFRACTION
5WWT_CTRNAX-RAY DIFFRACTION
5X6B_PTRNACYSX-RAY DIFFRACTION
5ZLU_DDP-site tRNAELECTRON MICROSCOPY
6AZ1_4E-SITE TRNAELECTRON MICROSCOPY
6BOH_NCtRNAX-RAY DIFFRACTION
6D90_3P-tRNAELECTRON MICROSCOPY
6ENJ_xproline tRNAELECTRON MICROSCOPY
6GSJ_3LtRNAThrX-RAY DIFFRACTION
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