RNA Structure

Tree Topology: 5_1


Topological Aspects

  • 5 Vertices


  • Eigenvalues
  • 0.0000000000
    0.3819660246
    1.3819659948
    2.6180338860
    3.6180338860


Examples of actual RNAs corresponding to this structure from RNA databases: 79

PDB_Chain Type Discovery Method
1D4R_BA29-MER OF MODIFIED SRP RNA HELIX 6X-RAY DIFFRACTION
1KXK_Aai5g group II Self-splicing intronX-RAY DIFFRACTION
1P5O_A77-MERSOLUTION NMR
1P5P_A77-MERSOLUTION NMR
1RY1_NMRNA (31-MER)ELECTRON MICROSCOPY
1XJR_As2m RNAX-RAY DIFFRACTION
1ZX7_CEDF5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)X-RAY DIFFRACTION
1ZZ5_ACBD5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3'X-RAY DIFFRACTION
2A04_ACBD5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3'X-RAY DIFFRACTION
2D1A_ABRNASOLUTION NMR
2GCS_BglmS ribozyme RNAX-RAY DIFFRACTION
2GCV_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
2GM0_ABRNA (35-MER)SOLUTION NMR
2H0S_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
2H0W_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
2H0X_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
2H0Z_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
2HO6_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
2HO7_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
2J28_84.5S SIGNAL RECOGNITION PARTICLE RNAELECTRON MICROSCOPY
2L1F_BRNA (66-MER)SOLUTION NMR
2Z74_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
2Z75_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
3B4A_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
3B4B_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
3J45_423S ribosomal RNAELECTRON MICROSCOPY
3J45_523S RIBOSOMAL RNAELECTRON MICROSCOPY
3J46_423S ribosomal RNAELECTRON MICROSCOPY
3JB9_CU5 snRNAELECTRON MICROSCOPY
3P59_EACGBDFHRNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*X-RAY DIFFRACTION
3RW6_Hconstitutive transport element(CTE)of Mason-PfizerX-RAY DIFFRACTION
3U4M_BRNA (80-MER)X-RAY DIFFRACTION
3U56_BRNA (80-MER)X-RAY DIFFRACTION
3UMY_BRNA (80-MER)X-RAY DIFFRACTION
4K4S_BFCGDHRNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*X-RAY DIFFRACTION
4KZD_RRNA (84-MER)X-RAY DIFFRACTION
4KZE_RRNA (84-MER)X-RAY DIFFRACTION
4LCK_FT-BOX RIBOSWITCH STEM IX-RAY DIFFRACTION
4MEG_B(121-MER) RIBOZYMEX-RAY DIFFRACTION
4MEH_B(122-MER) RIBOZYMEX-RAY DIFFRACTION
4MGN_AglyQS T box riboswitchX-RAY DIFFRACTION
4N0T_BU6 SNRNAX-RAY DIFFRACTION
4Q9Q_RSPINACH RNA APTAMERX-RAY DIFFRACTION
4Q9R_RSPINACH RNA APTAMERX-RAY DIFFRACTION
4QG3_BFRAGMENT OF 23S RRNAX-RAY DIFFRACTION
4QVI_Bfragment of 23S rRNAX-RAY DIFFRACTION
4TS2_YXSpinach RNA aptamer, bimolecular constructX-RAY DIFFRACTION
4TZP_FGLYQ T-BOX STEM IX-RAY DIFFRACTION
4V61_BC4.8S rRNAELECTRON MICROSCOPY
4WZJ_VU4 small nuclear RNA variantX-RAY DIFFRACTION
4XW7_APFL RNAX-RAY DIFFRACTION
4XWF_Apfl RNAX-RAY DIFFRACTION
5AKA_74.5S ribosomal RNAELECTRON MICROSCOPY
5B2O_BGUIDE RNAX-RAY DIFFRACTION
5B2Q_BGuide RNAX-RAY DIFFRACTION
5DCV_DRNA (47-MER)X-RAY DIFFRACTION
5H1S_B5S RRNAELECTRON MICROSCOPY
5IEM_ARNA (57-MER)SOLUTION NMR
5LI0_B5S ribosomal RNAELECTRON MICROSCOPY
5LJ3_UU5 SNRNA (SMALL NUCLEAR RNA)ELECTRON MICROSCOPY
5LJ5_UU5 SNRNA (SMALL NUCLEAR RNA)ELECTRON MICROSCOPY
5LYS_B7SK RNAX-RAY DIFFRACTION
5LYU_B7SK RNAX-RAY DIFFRACTION
5LYV_BRNA (57-MER)X-RAY DIFFRACTION
5MPS_5U5 SNRNAELECTRON MICROSCOPY
5MQ0_5SACCHAROMYCES CEREVISIAE STRAIN WI_C_MBSP_4 CHROMOELECTRON MICROSCOPY
5MQF_5HOMO SAPIENS U5 A SMALL NUCLEAR RNAELECTRON MICROSCOPY
5ND8_B5S ribosomal RNAELECTRON MICROSCOPY
5NPM_B23S RIBOSOMAL RNAX-RAY DIFFRACTION
5O9Z_5Homo sapiens U5 A small nuclear RNAELECTRON MICROSCOPY
5VT0_RESCHERICHIA COLI 6S RNA DERIVATIVE (112-MER)ELECTRON MICROSCOPY
5WSG_ESaccharomyces cerevisiae S288c SNR6 snRNAELECTRON MICROSCOPY
5XTM_DRNA (47-MER)X-RAY DIFFRACTION
5Y88_DU6 SNRNAELECTRON MICROSCOPY
5YLZ_DU6 SNRNAELECTRON MICROSCOPY
5ZWM_IU4 snRNAELECTRON MICROSCOPY
5ZWO_IU4 SNRNAELECTRON MICROSCOPY
6B14_RRNA (86-MER)X-RAY DIFFRACTION
6B3K_RRNA (83-MER),RNA (83-MER)X-RAY DIFFRACTION
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