RNA Structure

Tree Topology: 5_2

Topological Aspects

  • 5 Vertices


  • Eigenvalues
    • 0.0000000000
    0.5188056827
    1.0000000000
    2.3111078739
    4.1700863838


Examples of actual RNAs corresponding to this structure from RNA databases: 73

PDB_Chain Type Discovery Method
1C04_E23S RRNA FRAGMENTX-RAY DIFFRACTION
1DK1_BRRNA FRAGMENTX-RAY DIFFRACTION
1F7Y_B16S RIBOSOMAL RNA FRAGMENTX-RAY DIFFRACTION
1FOQ_BBACTERIOPHAGE PHI29 PROHEAD RNAELECTRON MICROSCOPY
1HC8_C58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAINX-RAY DIFFRACTION
1J2B_CtRNA(Val)X-RAY DIFFRACTION
1MMS_C23S RIBOSOMAL RNAX-RAY DIFFRACTION
1OLN_CRNATHEORETICAL MODEL
1QA6_C58 NUCLEOTIDE RIBOSOMAL RNA DOMAINX-RAY DIFFRACTION
1UN6_F5S RIBOSOMAL RNAX-RAY DIFFRACTION
1Y39_C58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAINX-RAY DIFFRACTION
2HGH_B55-MERSOLUTION NMR
2JQ7_BRIBOSOMAL RNASOLUTION NMR
2LU0_ARNA (49-MER)SOLUTION NMR
2NC1_AIRES RNA (67-MER)SOLUTION NMR
2WWB_D5.8S RRNAELECTRON MICROSCOPY
3B4C_BGLMS RIBOZYME RNAX-RAY DIFFRACTION
3E5C_ASMK box (SAM-III) RiboswitchX-RAY DIFFRACTION
3E5E_ASMK BOX (SAM-III) RIBOSWITCH FOR RNAX-RAY DIFFRACTION
3E5F_ASMK BOX (SAM-III) RIBOSWITCH FOR RNAX-RAY DIFFRACTION
3G4S_95S RIBOSOMAL RNAX-RAY DIFFRACTION
3JCS_526S epsilon ribosomal RNAELECTRON MICROSCOPY
3PIO_Y5S RIBOSOMAL RNAX-RAY DIFFRACTION
3R4F_ApRNAX-RAY DIFFRACTION
3SD3_ATETRAHYDROFOLATE RIBOSWITCHX-RAY DIFFRACTION
4LVV_ATHF RIBOSWITCHX-RAY DIFFRACTION
4LVW_ATHF RIBOSWITCHX-RAY DIFFRACTION
4LVX_ATHF RIBOSWITCHX-RAY DIFFRACTION
4LVY_ATHF RIBOSWITCHX-RAY DIFFRACTION
4LVZ_ATHF riboswitchX-RAY DIFFRACTION
4LW0_ATHF RIBOSWITCHX-RAY DIFFRACTION
4NYG_ATHIM TPP RIBOSWITCHX-RAY DIFFRACTION
4OQU_ASAM-I/IV riboswitchX-RAY DIFFRACTION
4PQV_AXRN1-resistant flaviviral RNAX-RAY DIFFRACTION
4UN3_ASGRNAX-RAY DIFFRACTION
4UN4_ASGRNAX-RAY DIFFRACTION
4UN5_ASGRNAX-RAY DIFFRACTION
4V4G_BA5S RIBOSOMAL RNAX-RAY DIFFRACTION
4V4V_B95S ribosomal RNAELECTRON MICROSCOPY
4V7L_AWtRNA-GlnX-RAY DIFFRACTION
4V92_AZRNA OF CRICKET-PARALYSIS-VIRUS-IRESELECTRON MICROSCOPY
4ZT0_Dsingle-guide RNAX-RAY DIFFRACTION
4ZT9_DSINGLE-GUIDE RNAX-RAY DIFFRACTION
5B2R_AGUIDE RNAX-RAY DIFFRACTION
5B2S_AGUIDE RNAX-RAY DIFFRACTION
5B2T_AGUIDE RNAX-RAY DIFFRACTION
5C7W_C 5'-MONOPHOSPHATE Z X-RAY DIFFRACTION
5DUN_ARNA (54-MER)X-RAY DIFFRACTION
5E7K_3LtRNALysX-RAY DIFFRACTION
5FL8_z5S ribosomal RNAELECTRON MICROSCOPY
5FQ5_ASGRNAX-RAY DIFFRACTION
5FW1_ASGRNAX-RAY DIFFRACTION
5FW2_ASGRNAX-RAY DIFFRACTION
5FW3_ASGRNAX-RAY DIFFRACTION
5G2Y_AGROUP II INTRONELECTRON MICROSCOPY
5GM6_DSaccharomyces cerevisiae strain CDRDR_sf_H chromosELECTRON MICROSCOPY
5GMK_DU5 SNRNAELECTRON MICROSCOPY
5JCS_z5S ribosomal RNAELECTRON MICROSCOPY
5LKS_L75S ribosomal RNAELECTRON MICROSCOPY
5LQW_5U5 SNRNAELECTRON MICROSCOPY
5TPY_ARNA (71-MER)X-RAY DIFFRACTION
5U33_BSGRNAX-RAY DIFFRACTION
5VW1_CSGRNAX-RAY DIFFRACTION
5WFS_yPhe-tRNA-PheELECTRON MICROSCOPY
5WSG_DU5 SNRNAELECTRON MICROSCOPY
5WTI_BRNA (123-MER)X-RAY DIFFRACTION
5XXB_35S RNAELECTRON MICROSCOPY
5Y88_BU5 SNRNAELECTRON MICROSCOPY
5YLZ_BU5 SNRNAELECTRON MICROSCOPY
6BK8_5U5 SNRNAELECTRON MICROSCOPY
6C0F_6ITS2ELECTRON MICROSCOPY
6CB1_6ITS2ELECTRON MICROSCOPY
6GSL_3LtRNAArgX-RAY DIFFRACTION
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