Shereef Elmetwaly

Department of Chemistry
New York University
100 Wash. Sq. East
New York, NY 10003
Phone: (212) 998-8399



  • N. Baba, S. Elmetwaly, N. Kim, and T. Schlick,”Predicting Large RNA-Like Topologies by a Knowledge-Based Clustering Approach”, J. Mol. Biol., doi:10.1016/j.jmb.2015.10.009 (2016)
  • M. Zahran, C. S. Bayrak, S. Elmetwaly, and T. Schlick, “RAG-3D: a search tool for RNA 3D substructures”, Nucl. Acids Res., doi: 10.1093/nar/gkv823 (2015)
  • N. Kim, Z. Zheng, S. Elmetwaly and T. Schlick, "RNA Graph Partitioning for the Discovery of RNA Modularity: A Novel Application of Graph Partition Algorithm to Biology", PLoS ONE, 9(9): e106074, DOI: 10.1371/journal.pone.0106074 (2014)
  • N. Kim, C. Laing, S. Elmetwaly, S. Jung, J. Curuksu, and T. Schlick, "Graph-based sampling for approximating global helical topologies of RNA", PNAS, DOI: 10.1073/pnas.1318893111 (2014)
  • C. Laing, S. Jung, N. Kim, S. Elmetwaly, M. Zahran, and T. Schlick, "Predicting Helical Topologies in RNA Junctions as Tree Graphs", PLoS ONE 8(8): e71947. doi:10.1371/journal.pone.0071947 (2013)
  • J. Izzo, N. Kim, S. Elmetwaly, and T. Schlick, “RAG: An Update to the RNA-As-Graphs Resource”, BMC Bioinformatics, 12:219 (2011)
  • N. Kim*, J. Izzo*, S. Elmetwaly*, H.H. Gan and T. Schlick, “Computational Generation and Screening of RNA Motifs in Large Nucleotide Sequence Pools”, NAR, doi:10.1093/nar/gkq282 (2010) (* equally contributed)
  • K. Ravindran, M. Rabby, and S. Elmetwaly, “Management Intelligence for Optimal Resource Allocations in Network Server Systems”, Network Operations and Management Symposium (NOMS) IEEE, 389-396, (2010)
  • N. Kim, J.S. Shin, S. Elmetwaly, H.H. Gan and T. Schlick, "RAGPOOLS: RNA-As-Graph-Pools A Web Server for Assisting the Design of Structured RNA Pools for In Vitro Selection", Bioinformatics, 23(21): 2959-2960 (2007)