References

•  Joseph Izzo, Namhee Kim, Shereef Elmetwaly, and Tamar Schlick. RAG: An Update to the RNA-As-Graphs Resource. BMC Bioinformatics, 12: 219 (2011).

• Namhee Kim, Joseph Izzo, Shereef Elmetwaly, Hin Hark Gan and Tamar Schlick. Computational Generation and Screening of RNA Motifs in Large Nucleotide Sequence Pools. Nuc. Acids Res., doi:10.1093/nar/gkq282 (2010).
• Giulio Quarta, Namhee Kim, Joseph Izzo and Tamar Schlick. Analysis of Riboswitch Structure and Function by an Energy Landscape Framework. J. Mol. biol., 393: 993-1003 (2009).
• Namhee Kim, Hin Hark Gan and Tamar Schlick. A computational proposal for designing structured RNA pools for in vitro selection of RNAs. http://www.ncbi.nlm.nih.gov/pubmed/14962931RNA, 13:478-492 (2007).
• Namhee Kim, Jin Sup Shin, Shereef Elmetwaly, Hin Hark Gan and Tamar Schlick. RAGPOOLS: RNA-As-Graph-Pools -- A Web Server for Assisting the Design of Structured RNA Pools. Bioinformatics, 23:2959-2960 (2007).
• Jana Gevertz, Hin Hark Gan and Tamar Schlick. In Vitro RNA Random Pools are Not Structurally Diverse: A Computational Analysis. RNA 11: 853--863 (2005)
• Namhee Kim, N Shiffeldrim, Hin Hark Gan and Tamar Schlick. Candidates for novel RNA topologies. J. Mol. Biol., 341(5):1129-44 (2004).
• Julie Zorn, Hin Hark Gan, Nahum Shiffeldrim and Tamar Schlick. Structural motifs in ribosomal RNAs: implications for RNA design and genomics. Biopolymers., 73(3):340-7 (2004).
• Hin Hark Gan, Daniela Fera, Julie Zorn, Nahum Shiffeldrim, Michael Tang, Uri Laserson, Namhee Kim, and Tamar Schlick. RAG: RNA-As-Graphs Database - Concepts, Analysis, and Features. Bioinformatics, 20(8):1285-91 (2004).
• Hin Hark Gan, Samuela Pasquali, and Tamar Schlick. Exploring the repertoire of RNA secondary motifs using graph theory with implications for RNA design. Nucleic Acids Res., 31, 2926-2943 (2003).

For further information, please email Prof. T. Schlick at schlick@nyu.edu