Database of RNA Tree Graphs

 

List of RNA Tree Graphs by Number of Vertices:   

                                                               2      3      4      5      6      7      8      9      10      11      12      13     


8 VERTICES


Number of Possible RNA Topologies: 23
Number of Motifs Found: 11
Number of Missing Motifs: 12


 

To learn more about an RNA topology, please click on its tree graph.

These graphs have been ordered according to the second smallest eigenvalue of their Laplacian matrix (λ2 is given).

**Please Note: Red graphs symbolize topologies that have been discovered in naturally occurring structures, while blue and black graphs denote "missing motifs" that have not yet been discovered in nature.
Missing motifs are subdivided into two categories: topologies predicted by k-NN clustering to be RNA-like, or likely to be discovered in naturually occuring RNAs (blue graphs) and topologies predicted by k-NN clustering to be non-RNA-like, or not expected to be found in nature (black graphs).
 

ID: (8,1)
= 0.1522409320

 
 
 

ID: (8,2)
= 0.1667170078

 
 
 

ID: (8,3)
= 0.1863934994

 
 
 

ID: (8,4)
= 0.1863934994

 
 
 

ID: (8,5)
= 0.1980622560

 
 
 

ID: (8,6)
= 0.2022566646

 
 
 

ID: (8,7)
= 0.2136822641

 
 
 

ID: (8,8)
= 0.2242871374

 
 
 

ID: (8,9)
= 0.2384428233

 
 
 

ID: (8,10)
= 0.2434017509

 
 
 

ID: (8,11)
= 0.2508824468

 
 
 

ID: (8,12)
= 0.2537868023

 
 
 

ID: (8,13)
= 0.2679491937

 
 
 

ID: (8,14)
= 0.2774069011

 
 
 

ID: (8,15)
= 0.2888014019

 
 
 

ID: (8,16)
= 0.3064748049

 
 
 

ID: (8,17)
= 0.3186693490

 
 
 

ID: (8,18)
= 0.3542487025

 
 
 

ID: (8,19)
= 0.3738019168

 
 
 

ID: (8,20)
= 0.3819660246

 
 
 

ID: (8,21)
= 0.3819660246

 
 
 

ID: (8,22)
= 0.4524933994

 
 
 

ID: (8,23)
= 1.0000000000

 
 
 



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